API Reference¶
I/O Management¶
pyengnet.File
: Class used to manage file I/O operations and data visualization.pyengnet.File.load()
: Load dataset from a txt or csv file.pyengnet.File.saveFile()
: Save network to file (can be used to store full and/or pruned networks)pyengnet.File.showGraph()
: Display a specific network
Ensemble¶
pyengnet.Engnet
: Class in charge of controlling the execution of the EnGNet algorithm.pyengnet.Engnet.process()
: Function that runs the EngNet algorithm. Depending on the parameters of this function, the algorithm will be executed in parallel with CPU processors or GPU devices.pyengnet.Kendall
: Kendall measurement is coded in a parallel ecosystem with CPUs.pyengnet.NMI
: NMI measurement is coded in a parallel ecosystem with CPUs.pyengnet.Spearman
: Spearman measurement is coded in a parallel ecosystem with CPUs.pyengnet.src.correlations
: Execution of Kendall, NMI, and Spearman measures under a parallel multi-GPU ecosystem (CUDA). In addition, it detects those pairs of genes that exceed the threshold for major voting.